- John 1-10. Wisdom Commentary Series 44A. Collegeville, MN: Liturgical Press, 2021.
- John Vol 11-21. Wisdom Commentary Series 44B. Collegeville, MN: Liturgical Press, 2021.
- Dwelling in the Household of God: Johannine Ecclesiology and Spirituality. Collegeville: Liturgical Press, 2007.
- God Dwells with Us: Temple Symbolism in the Fourth Gospel. Collegeville, MN: Liturgical Press, 2001.
- John, Qumran and the Dead Sea Scrolls: Sixty Years of Discovery and Debate. Edited by Mary L. Coloe & Tom Thatcher. Early Judaism and Its Literature 32. Atlanta: SBL, 2011.
- Creation is Groaning: Biblical and Theological Perspectives. Edited by Mary L. Coloe. Collegeville, MN: Liturgical Press, 2013.
- Transcending Boundaries: Contemporary Readings of the New Testament. Edited by Rekha M. Chennatu & Mary L. Coloe. Biblioteca Di Scienze Religiose 187. Rome: Libreria Ateneo Salesiano, 2005.
